Rabbit microsatellite analysis

Analysis of a database of genetic data from different species of rabbits.

The data set consisted of 45 allele attributes (two values each) from ~500 individuals. One of the main challenges turned out to be the preprocessing of the data, such as dealing with missing values or inaccurate measurements, which represented a large part of the data set.

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From the many data analysis techniques tried, the most successful were Principal Component Analysis and Multidimensional Scaling for distinguishing wild rabbits from domestic ones. This shows that there is a significant genetic difference between these two groups, as opposed to the multiple species within each, that prove much harder to identify.